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31 Open 159 Closed
31 Open 159 Closed
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Issues list

Diploid and tetraploid samples 0.3.0 Oriel Upcoming version of smudgeplot 0.4.0 Arched For things related to sploidyplot branch genomescope included smudgeplot included if smudgeplot was posted with the quesiton / problem
#203 opened May 22, 2025 by ewoutcrombez
9
Hexaploid interpretation and genome size inconsistency genomescope included
#202 opened May 19, 2025 by Homap
1
Tetraploid species genomescope included smudgeplot included if smudgeplot was posted with the quesiton / problem
#201 opened May 19, 2025 by Homap
5
Octoploid interpretation - more coverage needed? 0.4.0 Arched For things related to sploidyplot branch genomescope included smudgeplot included if smudgeplot was posted with the quesiton / problem
#200 opened Apr 18, 2025 by SamCT
1
Varying ploidy level from NGS vs HiFi reads 0.4.0 Arched For things related to sploidyplot branch genomescope included smudgeplot included if smudgeplot was posted with the quesiton / problem
#199 opened Apr 8, 2025 by sadikmz
5
ktab.1 is missing when running hetmer
#198 opened Apr 3, 2025 by Kendall-Lee
1
situation of decaploids
#197 opened Apr 2, 2025 by casusr
2
Segmentation fault when extracting kmer pairs
#196 opened Mar 20, 2025 by n8mriley
Difficulty interpreting examples in the Genomescope 2.0 paper
#195 opened Mar 14, 2025 by mscbig
1
Genomescope plot cut off
#194 opened Mar 10, 2025 by lilymaya
6
Error in strsplit(.peak_sizes[, "structure"], "") : non-character argumen 0.4.0 Arched For things related to sploidyplot branch data included for issues with .smu file dev for issues related to development branch
#193 opened Feb 27, 2025 by AlcaArctica
1
Smudgeplot predicts tetraploid 0.2.5 Double-hung Smudgeplot done with the 0.2.5 Double-hung with curtains version genomescope included smudgeplot included if smudgeplot was posted with the quesiton / problem
#192 opened Feb 26, 2025 by aryadevias
6
Adjust the range of explored coverages to be more sensible potential problems for potential problems given different scenarios (How does XXX infulence sumdgeplot?)
#191 opened Feb 18, 2025 by KamilSJaron
@KamilSJaron
QC genomes uring extracted k-mer pairs 0.9.9 Sliding For the future release of sploidyplot_obj branch dev for issues related to development branch
#190 opened Feb 17, 2025 by KamilSJaron
2 of 6 tasks
1
improve interface 0.9.9 Sliding For the future release of sploidyplot_obj branch dev for issues related to development branch
#188 opened Feb 15, 2025 by KamilSJaron
2 tasks
1
Question: dump sequences of hetmers enhancement New feature or request
#185 opened Feb 3, 2025 by jts
3
The problems encountered when using the command “smudgeplot.py all”
#184 opened Jan 30, 2025 by liuweiming1
7
Smudgeplot predicts polyploidy
#182 opened Dec 8, 2024 by leio0326
8
Catch exceptions of hetmer count 0.4.0 Arched For things related to sploidyplot branch enhancement New feature or request
#181 opened Dec 6, 2024 by KamilSJaron
smudgeplot.py hetmers not producing kmerpairs_text.smu (.trim.ktab only) bug Something isn't working genomescope included
#179 opened Dec 3, 2024 by gemmacol
@thegenemyers
18
Histogram was gone 0.4.0 Arched For things related to sploidyplot branch enhancement New feature or request smudgeplot included if smudgeplot was posted with the quesiton / problem
#177 opened Nov 28, 2024 by xiekunwhy
6
Handling homozygous genomes with Arched version 0.4.0 Arched For things related to sploidyplot branch dev for issues related to development branch enhancement New feature or request
#176 opened Nov 26, 2024 by LeoVincenzi
1
Process was automatically killed 0.2.5 Double-hung Smudgeplot done with the 0.2.5 Double-hung with curtains version performance issues regarding scalability and performance of the method.
#136 opened Nov 2, 2023 by yanjw123
3
Request for feedback on smudgeplot optimization and interpretation (diploid? haploid?) 0.2.5 Double-hung Smudgeplot done with the 0.2.5 Double-hung with curtains version 0.3.0 Oriel Upcoming version of smudgeplot genomescope included smudgeplot included if smudgeplot was posted with the quesiton / problem
#133 opened Sep 13, 2023 by margaretc-ho
6
Prepare a testing battery 0.9.9 Sliding For the future release of sploidyplot_obj branch dev for issues related to development branch genomescope included smudgeplot included if smudgeplot was posted with the quesiton / problem
#127 opened Aug 22, 2023 by KamilSJaron
@KamilSJaron
1
ProTip! Adding no:label will show everything without a label.