GitHub - sib-swiss/PrfLib: Collection of experimental programs supporting the new profile format and search method of PROSITE and NUCSITE

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Collection of experimental programs supporting the new profile format and search method of PROSITE and NUCSITE

GPL-3.0 license

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Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
Alphabet.c		Alphabet.c
Alphabet.h		Alphabet.h
CVPBR322		CVPBR322
ErrTable.h		ErrTable.h
FileData.h		FileData.h
GTPA_HUMAN		GTPA_HUMAN
GeneralTypes.c		GeneralTypes.c
GeneralTypes.h		GeneralTypes.h
LICENSE		LICENSE
PrfAlign.c		PrfAlign.c
PrfAlign.h		PrfAlign.h
PrfData.c		PrfData.c
PrfData.h		PrfData.h
PrfExtr.c		PrfExtr.c
PrfExtr.h		PrfExtr.h
PrfFileData.c		PrfFileData.c
PrfFileData.h		PrfFileData.h
README		README
ReadFASTAFile.c		ReadFASTAFile.c
ReadFASTAFile.h		ReadFASTAFile.h
ReadFile.c		ReadFile.c
ReadFile.h		ReadFile.h
ReadPar.c		ReadPar.c
ReadPar.h		ReadPar.h
ReadPrfFile.c		ReadPrfFile.c
ReadPrfFile.h		ReadPrfFile.h
ReadSeqFile.c		ReadSeqFile.c
ReadSeqFile.h		ReadSeqFile.h
SeqData.c		SeqData.c
SeqData.h		SeqData.h
SeqExtr.c		SeqExtr.c
SeqExtr.h		SeqExtr.h
SeqFileData.c		SeqFileData.c
SeqFileData.h		SeqFileData.h
all.make		all.make
ecp.prf		ecp.prf
error.h		error.h
makefile		makefile
prosite13.prf		prosite13.prf
scan4prf.1		scan4prf.1
scan4prf.c		scan4prf.c
scan4prf.par		scan4prf.par
sh3.prf		sh3.prf
sh3.seq		sh3.seq
srch4prf.1		srch4prf.1
srch4prf.c		srch4prf.c
srch4prf.par		srch4prf.par
test.csh		test.csh
test.out		test.out

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"PrfLib" is a collection of experimental programs supporting the
new profile format and search method of PROSITE and NUCSITE.

Version 1.0 contains ANSI C source code and manual pages for
the following programs:

   scan4prf
   srch4prf

These programs have successfully been compiled and tested under
SunOS, Solaris, OSF1, IRIX, MacOS operating systems.

In order to compile the programs, type:

   make

This will create the two binaries listed above. You may now move these
binaries as well as the corresponding manual pages in:
 
   scan4prf.1
   srch4prf.1

to more appropriate directories.  
 
Further included in this release are seven demo data files:

   CVPBR322 
   GTPA_HUMAN
   ecp.prf
   prosite13.prf
   sh3.prf
   sh3.seq

a test script: 

   test.csh 

and a test ouput file. 

   test.out

To test the programs, type: 

   ( csh test.csh ) > out 
   diff test.out out 

Please send bug reports to:

   Nicolas Moeri
   E-mail: nmoeri@dma.epfl.ch  

Nicolas Moeri, October 30 1996