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21 Open 90 Closed
21 Open 90 Closed
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Issues list

New appmap feature produces memory issues bug Something isn't working documentation Improvements or additions to documentation invalid This doesn't seem right
#158 opened Mar 25, 2025 by MatthewRalston Cleaning interface, better error tracking, handling improvements
@MatthewRalston
Currently using Deepseek R1 privately dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation good first issue Good for newcomers help wanted Extra attention is needed invalid This doesn't seem right
#157 opened Mar 20, 2025 by MatthewRalston Suitable for academic use
@MatthewRalston
1
Graph node labeling and traversal update bug Something isn't working dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation duplicate This issue or pull request already exists invalid This doesn't seem right question Further information is requested wontfix This will not be worked on
#153 opened Aug 12, 2024 by MatthewRalston v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
1
Kolmogorov complexity bug Something isn't working documentation Improvements or additions to documentation invalid This doesn't seem right
#152 opened Aug 12, 2024 by MatthewRalston Suitable for academic use
@MatthewRalston
Notes on mouse ibd documentation Improvements or additions to documentation duplicate This issue or pull request already exists invalid This doesn't seem right
#151 opened Aug 12, 2024 by MatthewRalston Suitable for academic use
@MatthewRalston
Profile recomposition problem bug Something isn't working enhancement New feature or request help wanted Extra attention is needed invalid This doesn't seem right wontfix This will not be worked on
#150 opened Aug 12, 2024 by MatthewRalston V0.7 stable?
@MatthewRalston
2
.kdbg format and variants bug Something isn't working documentation Improvements or additions to documentation enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed invalid This doesn't seem right question Further information is requested wontfix This will not be worked on
#143 opened Jul 14, 2024 by MatthewRalston v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
@MatthewRalston
4
Expectation functions bug Something isn't working documentation Improvements or additions to documentation enhancement New feature or request question Further information is requested
#142 opened Jul 13, 2024 by MatthewRalston v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
@MatthewRalston
1
D2 metrics bug Something isn't working dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation duplicate This issue or pull request already exists enhancement New feature or request question Further information is requested
#141 opened Jul 13, 2024 by MatthewRalston v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
@MatthewRalston
Tetranucleotide bias and Karlin delta bug Something isn't working documentation Improvements or additions to documentation enhancement New feature or request question Further information is requested wontfix This will not be worked on
#140 opened Jul 13, 2024 by MatthewRalston v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
@MatthewRalston
Kmer.shred always returns sparse kmer_id/count array documentation Improvements or additions to documentation
#134 opened Apr 4, 2024 by MatthewRalston V0.7 stable?
@MatthewRalston
2
vsearch conda package dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation enhancement New feature or request
#131 opened Mar 29, 2024 by MatthewRalston edge list tuple
@MatthewRalston
1
Expanded row metadata for graph format dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation duplicate This issue or pull request already exists enhancement New feature or request good first issue Good for newcomers invalid This doesn't seem right
#130 opened Mar 29, 2024 by MatthewRalston V0.7 stable?
3
still no dl bug Something isn't working duplicate This issue or pull request already exists help wanted Extra attention is needed invalid This doesn't seem right
#125 opened Mar 7, 2024 by MatthewRalston edge list tuple
@MatthewRalston
3
Maybe take a walk? bug Something isn't working dependencies Pull requests that update a dependency file documentation Improvements or additions to documentation enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed question Further information is requested wontfix This will not be worked on
#122 opened Feb 20, 2024 by MatthewRalston v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
@MatthewRalston
4
twizza project template
#112 opened Jul 13, 2023 by MatthewRalston
Not ready for dls enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed invalid This doesn't seem right question Further information is requested wontfix This will not be worked on
#101 opened Dec 28, 2022 by MatthewRalston V0.7 stable?
@MatthewRalston
1
Maximum choice of k wrt NumPy array limitations
#96 opened Dec 6, 2022 by MatthewRalston
Larger look into the uint64 space, choosing the best k for my machine bug Something isn't working documentation Improvements or additions to documentation enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed invalid This doesn't seem right
#67 opened Jan 19, 2022 by MatthewRalston Replace PostgreSQL counter to in-memory
@MatthewRalston
7
Submit your edits for this evening by 11:30. documentation Improvements or additions to documentation help wanted Extra attention is needed invalid This doesn't seem right
#24 opened Jan 15, 2021 by MatthewRalston
2 tasks
@MatthewRalston
1
Probability needs a k-mer total column (N-k+1) and a unique k-mer count bug Something isn't working
#21 opened Jan 14, 2021 by MatthewRalston
@MatthewRalston
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