Skip to content

Issues: AMICI-dev/AMICI

Beta
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

117 Open 881 Closed
117 Open 881 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Incorrect handling of comparison expressions bug SBML SBML import related
#2700 opened Apr 24, 2025 by dweindl
3
SetuptoolsDeprecationWarning: project.license as a TOML table is deprecated
#2695 opened Apr 23, 2025 by dweindl
@dweindl
Support equality and xor in event trigger functions enhancement python SBML SBML import related
#2685 opened Apr 3, 2025 by dweindl
Refactor redundant event/Heaviside trigger processing
#2684 opened Apr 2, 2025 by dweindl
Clarify steady state simulation & events
#2673 opened Mar 26, 2025 by dweindl
tests/test_jax.py fails with DeprecationWarnings
#2672 opened Mar 26, 2025 by dweindl
More informative sigma<=0 error messages c++ enhancement
#2670 opened Mar 24, 2025 by dweindl
Implement PEtab v2 import enhancement PEtab PEtab-import related
#2662 opened Mar 13, 2025 by dweindl
@dweindl
1
Make all SBML model quantities accessible in the imported model SBML SBML import related
#2661 opened Mar 13, 2025 by dweindl
Store symbolic model during model import python
#2659 opened Mar 13, 2025 by dweindl
More efficient PEtab parameter mapping performance PEtab PEtab-import related
#2639 opened Jan 30, 2025 by dweindl
Remove timepoint overide flattening in jax enhancement new Newly created
#2637 opened Jan 29, 2025 by FFroehlich
JAX preequilibration may silently fail
#2628 opened Dec 16, 2024 by FFroehlich
Compute log-prior and unnormalized log-posterior in simulate_petab PEtab PEtab-import related
#2624 opened Dec 11, 2024 by dweindl
Enable seeding C++ RNG c++ enhancement python
#2599 opened Nov 26, 2024 by dweindl
Update steady state solver notebook documentation steady state Related to steady-state computation or sensitivity at steady state
#2582 opened Nov 10, 2024 by dweindl
Redundant/ambiguous information in amici::Model c++ refactoring
#2573 opened Nov 8, 2024 by dweindl
Support for sympy expressions for observables and sigmas enhancement python
#2568 opened Oct 24, 2024 by dweindl
1
GHA: redundant testing in test_python_cplusplus.yml macos_cpp_py, macos_python ci
#2567 opened Oct 24, 2024 by dweindl
segfaults with swig4.3 and PYTHONFAULTHANDLER=1 ci swig
#2565 opened Oct 24, 2024 by dweindl
11
Rate limit for inf/nan warnings c++ enhancement
#2558 opened Oct 20, 2024 by dweindl
swig/python detected a memory leak of type 'std::unique_ptr< amici::Model > *', no destructor found. swig
#2537 opened Oct 9, 2024 by dweindl
Reduce tolerances in benchmark model gradient checks ci
#2511 opened Sep 27, 2024 by dweindl
2
Test amici with no-GIL Python
#2490 opened Sep 2, 2024 by dweindl
Add tests for installing amici under conda ci
#2489 opened Aug 9, 2024 by dweindl
ProTip! Type g i on any issue or pull request to go back to the issue listing page.