made database info script compatible with info mode changes

Author: muellan

metacache-db-info

@@ -11,23 +11,22 @@ DB=$1
 if [ -e $DB ]; then
   echo "collecting statistics for database $DB"
 
-  ./metacache info $DB statistics | tail -n+2 > ${DB}_statistics.txt
+  ./metacache info $DB statistics | tail -n+1 > ${DB}_statistics.txt
 
-  ./metacache info $DB lineages | tail -n+2 > ${DB}_lineages.txt
+  ./metacache info $DB lineages | tail -n+1 > ${DB}_lineages.txt
 
   RANKSTAT=${DB}_ranks.txt
   rm -f $RANKSTAT
 
-  for r in subspecies species genus family order class phylum kingdom domain; do
+  for r in sequence subspecies species genus family order class phylum kingdom domain; do
     RESFILE=${DB}_rank_${r}.txt
 
-    ./metacache info $DB rank ${r}  | tail -n+3 > $RESFILE
+    ./metacache info $DB rank ${r}  | tail -n+2 > $RESFILE
 
-    no=$(cat $RESFILE | head -n 1 | grep -e -- | sed 's/--\s*//g' )
     nr=$(cat $RESFILE | wc -l)
     nr=$(( $nr - 1))
 
-    echo "$r: $nr    none: $no" >> $RANKSTAT
+    echo "$r: $nr" >> $RANKSTAT
   done
 
 fi

src/mode_info.cpp

@@ -251,7 +251,8 @@ void show_rank_statistics(const args_parser& args)
 
     for(const auto& s : stat) {
         cout << s.first->id() << " \t "
-             << s.first->name() << " \t " << s.second << '\n';
+             << s.first->name() << " \t "
+             << s.second << '\n';
     }
 }