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Freeze Python v3.12.3
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‎VERSION_MATRIX.md

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| Python | Jupyter Hub | Jupyter Lab | code‑server (Code) | Git | Git LFS | Pandoc | CTAN date[^2] | Quarto[^2] | Linux distro |
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|:-----------|:------------|:------------|:-------------------|:-------|:--------|:-------|:--------------|:------------|:-------------|
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| 3.12.3 | 5.0.0 | 4.2.1 | 4.89.1 (1.89.1) | 2.45.2 | 3.5.1 | 3.1.11 | | 1.4.555 | Debian 12 |
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| 3.12.3 | 5.0.0 | 4.2.1 | 4.89.1 (1.89.1) | 2.45.2 | 3.5.1 | 3.1.11 | 2024‑06‑06 | 1.4.555 | Debian 12 |
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| 3.11.9 | 4.1.5 | 4.1.5 | 4.22.1 (1.87.2) | 2.44.0 | 3.5.1 | 3.1.11 | | 1.4.552 | Debian 12 |
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| 3.12.2 | 4.1.5 | 4.1.6 | 4.23.0 (1.88.0) | 2.44.0 | 3.5.1 | 3.1.11 | 2024‑04‑09 | 1.4.553 | Debian 12 |
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| 3.11.8 | 4.1.5 | 4.1.5 | 4.22.1 (1.87.2) | 2.44.0 | 3.5.1 | 3.1.11 | 2024‑04‑02 | 1.4.552 | Debian 12 |

‎base/3.12.3.Dockerfile

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ARG BASE_IMAGE=debian
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ARG BASE_IMAGE_TAG=12
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ARG BUILD_ON_IMAGE=glcr.b-data.ch/python/ver
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ARG PYTHON_VERSION=3.12.3
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ARG CUDA_IMAGE_FLAVOR
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ARG NB_USER=jovyan
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ARG NB_UID=1000
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ARG JUPYTERHUB_VERSION=5.0.0
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ARG JUPYTERLAB_VERSION=4.2.1
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ARG CODE_BUILTIN_EXTENSIONS_DIR=/opt/code-server/lib/vscode/extensions
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ARG CODE_SERVER_VERSION=4.89.1
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ARG GIT_VERSION=2.45.2
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ARG GIT_LFS_VERSION=3.5.1
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ARG PANDOC_VERSION=3.1.11
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FROM ${BUILD_ON_IMAGE}${PYTHON_VERSION:+:}${PYTHON_VERSION}${CUDA_IMAGE_FLAVOR:+-}${CUDA_IMAGE_FLAVOR} AS files
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ARG NB_UID
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ENV NB_GID=100
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RUN mkdir /files
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COPY assets /files
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COPY conf/ipython /files
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COPY conf/jupyter /files
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COPY conf/jupyterlab /files
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COPY conf/shell /files
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COPY conf/user /files
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COPY scripts /files
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## Copy content of skel directory to backup
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RUN cp -a /files/etc/skel/. /files/var/backups/skel \
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&& chown -R ${NB_UID}:${NB_GID} /files/var/backups/skel \
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## Copy custom fonts
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&& mkdir -p /files/usr/local/share/jupyter/lab/static/assets \
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&& cp -a /files/opt/code-server/src/browser/media/css \
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/files/usr/local/share/jupyter/lab/static/assets \
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&& cp -a /files/opt/code-server/src/browser/media/fonts \
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/files/usr/local/share/jupyter/lab/static/assets \
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&& if [ -n "${CUDA_VERSION}" ]; then \
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## Use entrypoint of CUDA image
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mv /opt/nvidia/entrypoint.d /opt/nvidia/nvidia_entrypoint.sh \
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/files/usr/local/bin; \
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mv /files/usr/local/bin/start.sh \
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/files/usr/local/bin/entrypoint.d/99-start.sh; \
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mv /files/usr/local/bin/nvidia_entrypoint.sh \
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/files/usr/local/bin/start.sh; \
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fi \
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## Ensure file modes are correct when using CI
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## Otherwise set to 777 in the target image
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&& find /files -type d -exec chmod 755 {} \; \
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&& find /files -type f -exec chmod 644 {} \; \
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&& find /files/usr/local/bin -type f -exec chmod 755 {} \; \
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&& find /files/etc/profile.d -type f -exec chmod 755 {} \;
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FROM glcr.b-data.ch/git/gsi/${GIT_VERSION}/${BASE_IMAGE}:${BASE_IMAGE_TAG} AS gsi
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FROM glcr.b-data.ch/git-lfs/glfsi:${GIT_LFS_VERSION} AS glfsi
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FROM ${BUILD_ON_IMAGE}${PYTHON_VERSION:+:}${PYTHON_VERSION}${CUDA_IMAGE_FLAVOR:+-}${CUDA_IMAGE_FLAVOR}
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ARG DEBIAN_FRONTEND=noninteractive
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ARG BUILD_ON_IMAGE
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ARG CUDA_IMAGE_FLAVOR
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ARG NB_USER
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ARG NB_UID
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ARG JUPYTERHUB_VERSION
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ARG JUPYTERLAB_VERSION
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ARG CODE_BUILTIN_EXTENSIONS_DIR
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ARG CODE_SERVER_VERSION
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ARG GIT_VERSION
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ARG GIT_LFS_VERSION
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ARG PANDOC_VERSION
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ARG BUILD_START
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ARG CODE_WORKDIR
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ARG CUDA_IMAGE_LICENSE=${CUDA_VERSION:+"NVIDIA Deep Learning Container License"}
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ARG IMAGE_LICENSE=${CUDA_IMAGE_LICENSE:-"MIT"}
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ARG IMAGE_SOURCE=https://gitlab.b-data.ch/jupyterlab/python/docker-stack
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ARG IMAGE_VENDOR="b-data GmbH"
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ARG IMAGE_AUTHORS="Olivier Benz <olivier.benz@b-data.ch>"
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LABEL org.opencontainers.image.licenses="$IMAGE_LICENSE" \
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org.opencontainers.image.source="$IMAGE_SOURCE" \
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org.opencontainers.image.vendor="$IMAGE_VENDOR" \
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org.opencontainers.image.authors="$IMAGE_AUTHORS"
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ENV PARENT_IMAGE=${BUILD_ON_IMAGE}${PYTHON_VERSION:+:}${PYTHON_VERSION}${CUDA_IMAGE_FLAVOR:+-}${CUDA_IMAGE_FLAVOR} \
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NB_USER=${NB_USER} \
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NB_UID=${NB_UID} \
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JUPYTERHUB_VERSION=${JUPYTERHUB_VERSION} \
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JUPYTERLAB_VERSION=${JUPYTERLAB_VERSION} \
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CODE_SERVER_VERSION=${CODE_SERVER_VERSION} \
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GIT_VERSION=${GIT_VERSION} \
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GIT_LFS_VERSION=${GIT_LFS_VERSION} \
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PANDOC_VERSION=${PANDOC_VERSION} \
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BUILD_DATE=${BUILD_START}
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ENV NB_GID=100
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## Install Git
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COPY --from=gsi /usr/local /usr/local
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## Install Git LFS
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COPY --from=glfsi /usr/local /usr/local
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USER root
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RUN dpkgArch="$(dpkg --print-architecture)" \
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## Unminimise if the system has been minimised
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&& if [ $(command -v unminimize) ]; then \
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yes | unminimize; \
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fi \
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&& apt-get update \
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&& apt-get -y install --no-install-recommends \
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bash-completion \
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build-essential \
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curl \
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file \
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fontconfig \
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g++ \
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gcc \
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gfortran \
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gnupg \
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htop \
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info \
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jq \
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libclang-dev \
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man-db \
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nano \
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ncdu \
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procps \
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psmisc \
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screen \
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sudo \
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swig \
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tmux \
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vim-tiny \
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wget \
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zsh \
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## Git: Additional runtime dependencies
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libcurl3-gnutls \
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liberror-perl \
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## Git: Additional runtime recommendations
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less \
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ssh-client \
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## Python: Additional dev dependencies
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&& if [ -z "$PYTHON_VERSION" ]; then \
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apt-get -y install --no-install-recommends \
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python3-dev \
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## Install Python package installer
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## (dep: python3-distutils, python3-setuptools and python3-wheel)
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python3-pip \
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## Install venv module for python3
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python3-venv; \
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## make some useful symlinks that are expected to exist
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## ("/usr/bin/python" and friends)
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for src in pydoc3 python3 python3-config; do \
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dst="$(echo "$src" | tr -d 3)"; \
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if [ -s "/usr/bin/$src" ] && [ ! -e "/usr/bin/$dst" ]; then \
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ln -svT "$src" "/usr/bin/$dst"; \
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fi \
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done; \
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else \
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## Force update pip, setuptools and wheel
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curl -sLO https://bootstrap.pypa.io/get-pip.py; \
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python get-pip.py \
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pip \
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setuptools \
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wheel; \
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rm get-pip.py; \
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fi \
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## Install font MesloLGS NF
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&& mkdir -p /usr/share/fonts/truetype/meslo \
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&& curl -sL https://github.com/romkatv/powerlevel10k-media/raw/master/MesloLGS%20NF%20Regular.ttf -o "/usr/share/fonts/truetype/meslo/MesloLGS NF Regular.ttf" \
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&& curl -sL https://github.com/romkatv/powerlevel10k-media/raw/master/MesloLGS%20NF%20Bold.ttf -o "/usr/share/fonts/truetype/meslo/MesloLGS NF Bold.ttf" \
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&& curl -sL https://github.com/romkatv/powerlevel10k-media/raw/master/MesloLGS%20NF%20Italic.ttf -o "/usr/share/fonts/truetype/meslo/MesloLGS NF Italic.ttf" \
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&& curl -sL https://github.com/romkatv/powerlevel10k-media/raw/master/MesloLGS%20NF%20Bold%20Italic.ttf -o "/usr/share/fonts/truetype/meslo/MesloLGS NF Bold Italic.ttf" \
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&& fc-cache -fsv \
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## Git: Set default branch name to main
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&& git config --system init.defaultBranch main \
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## Git: Store passwords for one hour in memory
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&& git config --system credential.helper "cache --timeout=3600" \
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## Git: Merge the default branch from the default remote when "git pull" is run
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&& git config --system pull.rebase false \
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## Install pandoc
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&& curl -sLO https://github.com/jgm/pandoc/releases/download/${PANDOC_VERSION}/pandoc-${PANDOC_VERSION}-1-${dpkgArch}.deb \
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&& dpkg -i pandoc-${PANDOC_VERSION}-1-${dpkgArch}.deb \
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&& rm pandoc-${PANDOC_VERSION}-1-${dpkgArch}.deb \
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## Delete potential user with UID 1000
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&& if $(grep -q 1000 /etc/passwd); then \
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userdel $(id -un 1000); \
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fi \
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## Do not set user limits for sudo/sudo-i
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&& sed -i 's/.*pam_limits.so/#&/g' /etc/pam.d/sudo \
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&& if [ -f "/etc/pam.d/sudo-i" ]; then \
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sed -i 's/.*pam_limits.so/#&/g' /etc/pam.d/sudo-i; \
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fi \
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## Add user
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&& useradd -l -m -s $(which zsh) -N -u ${NB_UID} ${NB_USER} \
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## Mark home directory as populated
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&& touch /home/${NB_USER}/.populated \
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&& chown ${NB_UID}:${NB_GID} /home/${NB_USER}/.populated \
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&& chmod go+w /home/${NB_USER}/.populated \
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## Create backup directory for home directory
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&& mkdir -p /var/backups/skel \
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&& chown ${NB_UID}:${NB_GID} /var/backups/skel \
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## Install Tini
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&& curl -sL https://github.com/krallin/tini/releases/download/v0.19.0/tini-${dpkgArch} -o /usr/local/bin/tini \
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&& chmod +x /usr/local/bin/tini \
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## Clean up
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&& rm -rf /tmp/* \
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&& rm -rf /var/lib/apt/lists/* \
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${HOME}/.cache
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ENV PATH=/opt/code-server/bin:$PATH \
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CS_DISABLE_GETTING_STARTED_OVERRIDE=1
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## Install code-server
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RUN mkdir /opt/code-server \
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&& cd /opt/code-server \
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&& curl -sL https://github.com/coder/code-server/releases/download/v${CODE_SERVER_VERSION}/code-server-${CODE_SERVER_VERSION}-linux-$(dpkg --print-architecture).tar.gz | tar zxf - --no-same-owner --strip-components=1 \
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## Copy custom fonts
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&& mkdir -p /opt/code-server/src/browser/media/fonts \
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&& cp -a /usr/share/fonts/truetype/meslo/*.ttf /opt/code-server/src/browser/media/fonts \
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## Include custom fonts
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&& sed -i 's|</head>| <link rel="preload" href="{{BASE}}/_static/src/browser/media/fonts/MesloLGS NF Regular.woff2" as="font" type="font/woff2" crossorigin="anonymous">\n </head>|g' /opt/code-server/lib/vscode/out/vs/code/browser/workbench/workbench.html \
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&& sed -i 's|</head>| <link rel="preload" href="{{BASE}}/_static/src/browser/media/fonts/MesloLGS NF Italic.woff2" as="font" type="font/woff2" crossorigin="anonymous">\n </head>|g' /opt/code-server/lib/vscode/out/vs/code/browser/workbench/workbench.html \
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&& sed -i 's|</head>| <link rel="preload" href="{{BASE}}/_static/src/browser/media/fonts/MesloLGS NF Bold.woff2" as="font" type="font/woff2" crossorigin="anonymous">\n </head>|g' /opt/code-server/lib/vscode/out/vs/code/browser/workbench/workbench.html \
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&& sed -i 's|</head>| <link rel="preload" href="{{BASE}}/_static/src/browser/media/fonts/MesloLGS NF Bold Italic.woff2" as="font" type="font/woff2" crossorigin="anonymous">\n </head>|g' /opt/code-server/lib/vscode/out/vs/code/browser/workbench/workbench.html \
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&& sed -i 's|</head>| <link rel="stylesheet" type="text/css" href="{{BASE}}/_static/src/browser/media/css/fonts.css">\n </head>|g' /opt/code-server/lib/vscode/out/vs/code/browser/workbench/workbench.html \
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## Install code-server extensions
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&& cd /tmp \
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&& curl -sLO https://dl.b-data.ch/vsix/piotrpalarz.vscode-gitignore-generator-1.0.3.vsix \
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&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension piotrpalarz.vscode-gitignore-generator-1.0.3.vsix \
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&& curl -sLO https://dl.b-data.ch/vsix/mutantdino.resourcemonitor-1.0.7.vsix \
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&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension mutantdino.resourcemonitor-1.0.7.vsix \
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&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension alefragnani.project-manager \
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&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension GitHub.vscode-pull-request-github \
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&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension GitLab.gitlab-workflow \
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&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension ms-python.python \
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&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension ms-toolsai.jupyter \
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&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension christian-kohler.path-intellisense \
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&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension eamodio.gitlens@11.7.0 \
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&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension mhutchie.git-graph \
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&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension redhat.vscode-yaml \
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&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension grapecity.gc-excelviewer \
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&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension editorconfig.editorconfig \
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&& code-server --extensions-dir ${CODE_BUILTIN_EXTENSIONS_DIR} --install-extension DavidAnson.vscode-markdownlint \
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## Create folders temp and tmp for Jupyter extension
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&& cd /opt/code-server/lib/vscode/extensions/ms-toolsai.jupyter-* \
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&& mkdir -m 1777 temp \
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&& mkdir -m 1777 tmp \
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## Clean up
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&& rm -rf /tmp/* \
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${HOME}/.config \
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${HOME}/.local
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## Install JupyterLab
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RUN export PIP_BREAK_SYSTEM_PACKAGES=1 \
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&& pip install \
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jupyter-server-proxy \
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jupyterhub==${JUPYTERHUB_VERSION} \
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jupyterlab==${JUPYTERLAB_VERSION} \
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jupyterlab-git \
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jupyterlab-lsp \
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notebook \
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nbclassic \
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nbconvert \
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python-lsp-server[all] \
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## Jupyter Server Proxy: Set maximum allowed HTTP body size to 10 GiB
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&& sed -i 's/AsyncHTTPClient(/AsyncHTTPClient(max_body_size=10737418240, /g' \
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/usr/local/lib/python*/*-packages/jupyter_server_proxy/handlers.py \
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## Jupyter Server Proxy: Set maximum allowed websocket message size to 1 GiB
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&& sed -i 's/"_default_max_message_size",.*$/"_default_max_message_size", 1024 \* 1024 \* 1024/g' \
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/usr/local/lib/python*/*-packages/jupyter_server_proxy/websocket.py \
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&& sed -i 's/_default_max_message_size =.*$/_default_max_message_size = 1024 \* 1024 \* 1024/g' \
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/usr/local/lib/python*/*-packages/tornado/websocket.py \
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## Copy custom fonts
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&& mkdir -p /usr/local/share/jupyter/lab/static/assets/fonts \
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&& cp -a /usr/share/fonts/truetype/meslo/*.ttf /usr/local/share/jupyter/lab/static/assets/fonts \
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## Include custom fonts
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&& sed -i 's|</head>|<link rel="preload" href="{{page_config.fullStaticUrl}}/assets/fonts/MesloLGS NF Regular.woff2" as="font" type="font/woff2" crossorigin="anonymous"></head>|g' /usr/local/share/jupyter/lab/static/index.html \
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&& sed -i 's|</head>|<link rel="preload" href="{{page_config.fullStaticUrl}}/assets/fonts/MesloLGS NF Italic.woff2" as="font" type="font/woff2" crossorigin="anonymous"></head>|g' /usr/local/share/jupyter/lab/static/index.html \
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&& sed -i 's|</head>|<link rel="preload" href="{{page_config.fullStaticUrl}}/assets/fonts/MesloLGS NF Bold.woff2" as="font" type="font/woff2" crossorigin="anonymous"></head>|g' /usr/local/share/jupyter/lab/static/index.html \
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&& sed -i 's|</head>|<link rel="preload" href="{{page_config.fullStaticUrl}}/assets/fonts/MesloLGS NF Bold Italic.woff2" as="font" type="font/woff2" crossorigin="anonymous"></head>|g' /usr/local/share/jupyter/lab/static/index.html \
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&& sed -i 's|</head>|<link rel="stylesheet" type="text/css" href="{{page_config.fullStaticUrl}}/assets/css/fonts.css"></head>|g' /usr/local/share/jupyter/lab/static/index.html \
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## Clean up
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&& rm -rf /tmp/* \
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${HOME}/.cache
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## Switch back to ${NB_USER} to avoid accidental container runs as root
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USER ${NB_USER}
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ENV HOME=/home/${NB_USER} \
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CODE_WORKDIR=${CODE_WORKDIR:-/home/${NB_USER}/projects} \
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SHELL=/usr/bin/zsh \
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TERM=xterm-256color
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WORKDIR ${HOME}
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## Install Oh My Zsh with Powerlevel10k theme
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RUN sh -c "$(curl -fsSL https://raw.githubusercontent.com/ohmyzsh/ohmyzsh/master/tools/install.sh)" "" --unattended \
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&& git clone --depth=1 https://github.com/romkatv/powerlevel10k.git ${HOME}/.oh-my-zsh/custom/themes/powerlevel10k \
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&& ${HOME}/.oh-my-zsh/custom/themes/powerlevel10k/gitstatus/install -f \
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&& sed -i 's/ZSH="\/home\/jovyan\/.oh-my-zsh"/ZSH="$HOME\/.oh-my-zsh"/g' ${HOME}/.zshrc \
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&& sed -i 's/ZSH_THEME="robbyrussell"/ZSH_THEME="powerlevel10k\/powerlevel10k"/g' ${HOME}/.zshrc \
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&& echo "\n# set PATH so it includes user's private bin if it exists\nif [ -d \"\$HOME/bin\" ] && [[ \"\$PATH\" != *\"\$HOME/bin\"* ]] ; then\n PATH=\"\$HOME/bin:\$PATH\"\nfi" | tee -a ${HOME}/.bashrc ${HOME}/.zshrc \
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&& echo "\n# set PATH so it includes user's private bin if it exists\nif [ -d \"\$HOME/.local/bin\" ] && [[ \"\$PATH\" != *\"\$HOME/.local/bin\"* ]] ; then\n PATH=\"\$HOME/.local/bin:\$PATH\"\nfi" | tee -a ${HOME}/.bashrc ${HOME}/.zshrc \
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&& echo "\n# Update last-activity timestamps while in screen/tmux session\nif [ ! -z \"\$TMUX\" -o ! -z \"\$STY\" ] ; then\n busy &\nfi" >> ${HOME}/.bashrc \
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&& echo "\n# Update last-activity timestamps while in screen/tmux session\nif [ ! -z \"\$TMUX\" -o ! -z \"\$STY\" ] ; then\n setopt nocheckjobs\n busy &\nfi" >> ${HOME}/.zshrc \
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&& echo "\n# To customize prompt, run \`p10k configure\` or edit ~/.p10k.zsh." >> ${HOME}/.zshrc \
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&& echo "[[ ! -f ~/.p10k.zsh ]] || source ~/.p10k.zsh" >> ${HOME}/.zshrc \
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## Create user's private bin
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&& mkdir -p ${HOME}/.local/bin \
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## Record population timestamp
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&& date -uIseconds > ${HOME}/.populated \
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## Create backup of home directory
320+
&& cp -a ${HOME}/. /var/backups/skel
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## Copy files as late as possible to avoid cache busting
323+
COPY --from=files /files /
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COPY --from=files /files/var/backups/skel ${HOME}
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EXPOSE 8888
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## Configure container startup
329+
ENTRYPOINT ["tini", "-g", "--", "start.sh"]
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CMD ["start-notebook.sh"]

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