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bioproject_covariate_analysis.php
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<?php
$bioproject = (isset($_GET["key"])) ? urldecode($_GET["key"]) : "";
$at = (isset($_GET["at"])) ? urldecode($_GET["at"]) : "";
$is = (isset($_GET["is"])) ? urldecode($_GET["is"]) : "";
$confounder_json = json_decode(file_get_contents("input/bioproject_confounder_list.json"), true);
if (array_key_exists($bioproject, $confounder_json["confounders"])) {
$confounders = $confounder_json["confounders"][$bioproject];
$display_text = "Multivariate association analysis - ".$bioproject." | ".$at." | ".$is." | Confounders = [".$confounders."]";
} else {
$confounders = "";
$display_text = "Multivariate association analysis - ".$bioproject." | ".$at." | ".$is." | No confounders";
}
$dataJSON = json_encode(
array(
"bioproject" => $bioproject,
"at" => $at,
"is" => $is,
"confounders" => $confounders
)
);
?>
<!DOCTYPE html>
<html>
<head>
<meta charset="UTF-8">
<title>Multivariate association analysis - MDPD</title>
<link rel = "stylesheet" type = "text/css" href = "css/main.css" />
<script type = "text/javascript" src = "js/plot_covariate.js"></script>
<script type = "text/javascript" src = "https://cdn.plot.ly/plotly-latest.min.js"></script>
</head>
<body>
<div class = "section_header">
<center><p class="title">MDPD - Microbiome Database of Pulmonary Diseases</p></center>
</div>
<div class = "section_menu">
<center>
<table cellpadding="3px">
<tr class="nav">
<td class="nav"><a href="index.php" class="side_nav">Home</a></td>
<td class="nav"><a href="browse.php" class="side_nav">Browse</a></td>
<td class="nav"><a href="analysis.php" class="side_nav">Analysis</a></td>
<td class="nav"><a href="statistics.php" class="side_nav">Statistics</a></td>
<td class="nav"><a href="about.php" class="side_nav">About</a></td>
<td class="nav"><a href="help.html" class="side_nav">Help</a></td>
<td class="nav"><a href="team.html" class="side_nav">Team</a></td>
</tr>
</table>
</center>
</div>
<!--<div class = "section_left"></div>-->
<div class = "section_middle">
<p style="margin:0 0 10px 0; font-size:1.2em; font-weight:bold; text-align:center;"><?php echo $display_text; ?></p>
<div id="download_div" style="width:100%; text-align:center; display:none;">
<a id="download_button" download="multivariate_figure_data.tsv">
<button type="button" style="margin:2px;">Download figure data</button>
</a>
</div>
<div id="covariate_plot_div" style="width:70%; margin:0 15% 0 15%;">
<center><img style="height:300px;" src="resource/loading.gif" /></center>
</div>
<p id="taxa_button_group_heading" style="margin:3px; font-weight:bold; display:none;">Taxa details</p>
<div id="taxa_button_group" style="width:100%; background-color:#fff9e6; border:1px dashed #004d99; display:none;"></div>
<br/><hr/>
<p style="font-size:0.9em;text-align:center;">
© 2025 Bose Institute. All rights reserved. For queries, please contact Dr. Sudipto Saha
(<a style="color:#003325;" href="mailto:ssaha4@jcbose.ac.in">ssaha4@jcbose.ac.in</a>,
<a style="color:#003325;" href="mailto:ssaha4@gmail.com">ssaha4@gmail.com</a>).
</p>
</div>
</body>
<script>
<?php echo "getCovariateData('covariate_plot_div', '".$dataJSON."');"; ?>
</script>
</html>