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Coding in Python
Alexander Holmes edited this page Jul 5, 2023
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Start with a simple self-paced course (intro to variables and if statements) ~1 hour. This will give you a very brief introduction to Python and programming.
Alternatively, try this intro to Python for data science course ~4 hours This covers a bit more, including functions, and an intro to stats in python.
Introduction to plotting and data visualisation in Python via Matplotlib Most other plotting tools (including ones listed below) are built upon Matplotlib, so these are important fundamentals
Or this more comprehensive course on Python for neuroscience This course does not include videos It covers basics from variables and loops, to data manipulation and statistics. It might be good to check it out to fill in the gaps in your knowledge
- 0.0 NSB Programming Courses (in ALPHA)
- 1.0 Working on the Cluster
- 2.0 Programming Languages
- 2.1 Python
- 2.1.1 Getting Set Up
- 2.1.2 Coding in Python
- 2.1.3 Applications of Python in Neuroimaging
- 2.2 MATLAB
- 2.3 R and RStudio
- 2.4 Programming Intro Exercises
- 2.5 git and GitHub
- 2.6 SLURM and Job Submission
- 2.1 Python
- 3.0 Neuroimaging Tools and Packages
- 3.1 BIDS
- 3.2 FreeSurfer
- 3.3 FSL
- 3.4 Connectome Workbench/wb_command
- 3.5 fMRIPrep
- 3.6 QSIPrep
- 3.7 MICApipe
- 3.8 MRIQC
- 4.0 Specialist Tools