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salvador-blanco opened this issue Apr 19, 2018 · 3 comments
Open

Building problem libcaffe.so.1.0.0-rc3: undefined reference to `cv::applyColorMap(cv::_InputArray const&, cv::_OutputArray const&, int)' #16

salvador-blanco opened this issue Apr 19, 2018 · 3 comments

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@salvador-blanco
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salvador-blanco commented Apr 19, 2018 •
edited
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So, I have been having a lot of problems trying to compile caffe_train, but now I am stuck with this error.
And I haven't been able to find any solution online.

For what I have seen online this is a common problem when people use OpenCV 3. ...
But I am using 2.7

Error:

Built target device_query
Scanning dependencies of target train_net
[ 91%] Building CXX object tools/CMakeFiles/train_net.dir/train_net.cpp.o
Linking CXX executable compute_image_mean
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::applyColorMap(cv::_InputArray const&, cv::_OutputArray const&, int)'
collect2: error: ld returned 1 exit status
make[2]: *** [tools/compute_image_mean] Error 1
make[1]: *** [tools/CMakeFiles/compute_image_mean.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
Linking CXX executable convert_imageset
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::applyColorMap(cv::_InputArray const&, cv::_OutputArray const&, int)'
collect2: error: ld returned 1 exit status
make[2]: *** [tools/convert_imageset] Error 1
make[1]: *** [tools/CMakeFiles/convert_imageset.dir/all] Error 2
Linking CXX executable test_net
[ 91%] Built target test_net
Linking CXX executable finetune_net
Linking CXX executable net_speed_benchmark
[ 91%] Built target finetune_net
[ 91%] Built target net_speed_benchmark
Linking CXX executable extract_features
Linking CXX executable train_net
[ 91%] Built target train_net
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::applyColorMap(cv::_InputArray const&, cv::_OutputArray const&, int)'
collect2: error: ld returned 1 exit status
make[2]: *** [tools/extract_features] Error 1
make[1]: *** [tools/CMakeFiles/extract_features.dir/all] Error 2
Linking CXX executable caffe
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::applyColorMap(cv::_InputArray const&, cv::_OutputArray const&, int)'
collect2: error: ld returned 1 exit status
make[2]: *** [tools/caffe] Error 1
make[1]: *** [tools/CMakeFiles/caffe.bin.dir/all] Error 2
make: *** [all] Error 2

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I hope someone is able to give me some advice, thank you very much.
This was referenced Apr 19, 2018
Closed
Closed
@austingg
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austingg commented Jul 4, 2018

@salvador-blanco applyColorMap func locates in contrib module.

@qinannan
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I have a little trouble;
In file included from /home/buyizz/ML/caffe_train/src/caffe/cpm_data_transformer.cpp:4:0:
/usr/include/opencv2/contrib/contrib.hpp:273:23: error: ‘vector’ does not name a type
Octree( const vector& points, int maxLevels = 10, int minPoints = 20 );
^
/usr/include/opencv2/contrib/contrib.hpp:273:29: error: expected ‘,’ or ‘...’ before ‘<’ token
Octree( const vector& points, int maxLevels = 10, int minPoints = 20 );
^
/usr/include/opencv2/contrib/contrib.hpp:276:39: error: ‘vector’ does not name a type
virtual void buildTree( const vector& points, int maxLevels = 10, int minPoints = 20 );
^
/usr/include/opencv2/contrib/contrib.hpp:276:45: error: expected ‘,’ or ‘...’ before ‘<’ token
virtual void buildTree( const vector& points, int maxLevels = 10, int minPoints = 20 );
^
/usr/include/opencv2/contrib/contrib.hpp:278:44: error: ‘vector’ has not been declared
vector& points ) const;
^
/usr/include/opencv2/contrib/contrib.hpp:278:50: error: expected ‘,’ or ‘...’ before ‘<’ token
vector& points ) const;
^
/usr/include/opencv2/contrib/contrib.hpp:279:15: error: ‘vector’ does not name a type
const vector& getNodes() const { return nodes; }
^
/usr/include/opencv2/contrib/contrib.hpp:282:9: error: ‘vector’ does not name a type
vector points;
^
/usr/include/opencv2/contrib/contrib.hpp:283:9: error: ‘vector’ does not name a type
vector nodes;
^
/usr/include/opencv2/contrib/contrib.hpp:295:22: error: ‘vector’ does not name a type
Mesh3D(const vector& vtx);
^
/usr/include/opencv2/contrib/contrib.hpp:295:28: error: expected ‘,’ or ‘...’ before ‘<’ token
Mesh3D(const vector& vtx);
^
/usr/include/opencv2/contrib/contrib.hpp:302:35: error: ‘vector’ does not name a type
void computeNormals(const vector& subset, float normalRadius, int minNeighbors = 20);
^
/usr/include/opencv2/contrib/contrib.hpp:302:41: error: expected ‘,’ or ‘...’ before ‘<’ token
void computeNormals(const vector& subset, float normalRadius, int minNeighbors = 20);
^
/usr/include/opencv2/contrib/contrib.hpp:304:52: error: ‘vector’ does not name a type
void writeAsVrml(const String& file, const vector& colors = vector()) const;
^
/usr/include/opencv2/contrib/contrib.hpp:304:58: error: expected ‘,’ or ‘...’ before ‘<’ token
void writeAsVrml(const String& file, const vector& colors = vector()) const;

can you slove it?@austingg

@LVguomin
Copy link

So, I have been having a lot of problems trying to compile caffe_train, but now I am stuck with this error.
And I haven't been able to find any solution online.

For what I have seen online this is a common problem when people use OpenCV 3. ...
But I am using 2.7

Error:

Built target device_query
Scanning dependencies of target train_net
[ 91%] Building CXX object tools/CMakeFiles/train_net.dir/train_net.cpp.o
Linking CXX executable compute_image_mean
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::applyColorMap(cv::_InputArray const&, cv::_OutputArray const&, int)'
collect2: error: ld returned 1 exit status
make[2]: *** [tools/compute_image_mean] Error 1
make[1]: *** [tools/CMakeFiles/compute_image_mean.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
Linking CXX executable convert_imageset
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::applyColorMap(cv::_InputArray const&, cv::_OutputArray const&, int)'
collect2: error: ld returned 1 exit status
make[2]: *** [tools/convert_imageset] Error 1
make[1]: *** [tools/CMakeFiles/convert_imageset.dir/all] Error 2
Linking CXX executable test_net
[ 91%] Built target test_net
Linking CXX executable finetune_net
Linking CXX executable net_speed_benchmark
[ 91%] Built target finetune_net
[ 91%] Built target net_speed_benchmark
Linking CXX executable extract_features
Linking CXX executable train_net
[ 91%] Built target train_net
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::applyColorMap(cv::_InputArray const&, cv::_OutputArray const&, int)'
collect2: error: ld returned 1 exit status
make[2]: *** [tools/extract_features] Error 1
make[1]: *** [tools/CMakeFiles/extract_features.dir/all] Error 2
Linking CXX executable caffe
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::applyColorMap(cv::_InputArray const&, cv::_OutputArray const&, int)'
collect2: error: ld returned 1 exit status
make[2]: *** [tools/caffe] Error 1
make[1]: *** [tools/CMakeFiles/caffe.bin.dir/all] Error 2
make: *** [all] Error 2

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 CUDA_NVCC_FLAGS_RELWITHDEBINFO                                                                                                      
 CUDA_PROPAGATE_HOST_FLAGS        ON                                                                                                 
 CUDA_SDK_ROOT_DIR                CUDA_SDK_ROOT_DIR-NOTFOUND                                                                         
 CUDA_SEPARABLE_COMPILATION       OFF                                                                                                
 CUDA_TOOLKIT_INCLUDE             /usr/local/cuda/include                                                                            
 CUDA_TOOLKIT_ROOT_DIR            /usr/local/cuda                                                                                    
 CUDA_VERBOSE_BUILD               OFF                                                                                                
 CUDA_VERSION                     7.5                                                                                                
 CUDA_cublas_LIBRARY              /usr/local/cuda/lib64/libcublas.so 
 CUDA_cufft_LIBRARY               /usr/local/cuda/lib64/libcufft.so                                                                  
 CUDA_cupti_LIBRARY               /usr/local/cuda/extras/CUPTI/lib64/libcupti.so                                                     
 CUDA_curand_LIBRARY              /usr/local/cuda/lib64/libcurand.so                                                                 
 CUDA_cusparse_LIBRARY            /usr/local/cuda/lib64/libcusparse.so                                                               
 CUDA_nppc_LIBRARY                /usr/local/cuda/lib64/libnppc.so                                                                   
 CUDA_nppi_LIBRARY                /usr/local/cuda/lib64/libnppi.so                                                                   
 CUDA_npps_LIBRARY                /usr/local/cuda/lib64/libnpps.so                                                                   
 CUDNN_INCLUDE                    /usr/local/cuda/include                                                                            
 CUDNN_LIBRARY                    /usr/local/cuda/lib64/libcudnn.so                                                                  
 CUDNN_ROOT                                                                                                                          
 DOXYGEN_DOT_EXECUTABLE           DOXYGEN_DOT_EXECUTABLE-NOTFOUND                                                                    
 DOXYGEN_EXECUTABLE               DOXYGEN_EXECUTABLE-NOTFOUND                                                                        
 GFLAGS_INCLUDE_DIR               /usr/include                                                                                       
 GFLAGS_LIBRARY                   /usr/lib/x86_64-linux-gnu/libgflags.so                                                             
 GFLAGS_ROOT_DIR                                                                                                                     
 GIT_EXECUTABLE                   /usr/bin/git                                                                                       
 GLOG_INCLUDE_DIR                 /usr/include                                                                                       
 GLOG_LIBRARY                     /usr/lib/x86_64-linux-gnu/libglog.so                                                               
 GLOG_ROOT_DIR                                                                                                                       
 HDF5_CXX_COMPILER_EXECUTABLE     /usr/bin/h5c++                                                                                     
 HDF5_C_COMPILER_EXECUTABLE       /usr/bin/h5cc                                                                                      
 HDF5_DIFF_EXECUTABLE             HDF5_DIFF_EXECUTABLE-NOTFOUND                                                                      
 HDF5_DIR                         HDF5_DIR-NOTFOUND                                                                                  
 HDF5_Fortran_COMPILER_EXECUTAB   /usr/bin/h5fc                                                                                      
 HDF5_HL_INCLUDE_DIR              /usr/include                                                                                       
 HDF5_IS_PARALLEL                 OFF                                                                                                
 HDF5_hdf5_LIBRARY_DEBUG          HDF5_hdf5_LIBRARY_DEBUG-NOTFOUND                                                                   
 HDF5_hdf5_LIBRARY_RELEASE        /usr/lib/x86_64-linux-gnu/libhdf5.so                                                               
 HDF5_hdf5_hl_LIBRARY_DEBUG       HDF5_hdf5_hl_LIBRARY_DEBUG-NOTFOUND                                                                
 HDF5_hdf5_hl_LIBRARY_RELEASE     /usr/lib/x86_64-linux-gnu/libhdf5_hl.so                                                            
 LMDB_INCLUDE_DIR                 /usr/include                                                                                       
 LMDB_LIBRARIES                   /usr/lib/x86_64-linux-gnu/liblmdb.so                                                               
 LevelDB_INCLUDE                  /usr/include                                                                                       
 LevelDB_LIBRARY                  /usr/lib/x86_64-linux-gnu/libleveldb.so                                                            
 OpenCV_3RDPARTY_LIB_DIR_DBG                                                                                                         
 OpenCV_3RDPARTY_LIB_DIR_OPT                                                                                                         
 OpenCV_CONFIG_PATH               /usr/share/OpenCV                                                                                  
 OpenCV_DIR                       /usr/share/OpenCV                                                                                  
 OpenCV_LIB_DIR_DBG                                                                                                                  
 OpenCV_LIB_DIR_OPT                                                                                                                  
 PROTOBUF_INCLUDE_DIR             /usr/include                                                                                       
 PROTOBUF_LIBRARY                 /usr/lib/x86_64-linux-gnu/libprotobuf.so                                                           
 PROTOBUF_LIBRARY_DEBUG           /usr/lib/x86_64-linux-gnu/libprotobuf.so                                                           
 PROTOBUF_LITE_LIBRARY            /usr/lib/x86_64-linux-gnu/libprotobuf-lite.so                                                      
 PROTOBUF_LITE_LIBRARY_DEBUG      /usr/lib/x86_64-linux-gnu/libprotobuf-lite.so                                                      
 PROTOBUF_PROTOC_EXECUTABLE       /usr/bin/protoc                                                                                    
 PROTOBUF_PROTOC_LIBRARY          PROTOBUF_PROTOC_LIBRARY-NOTFOUND                                                                   
 PROTOBUF_PROTOC_LIBRARY_DEBUG    PROTOBUF_PROTOC_LIBRARY_DEBUG-NOTFOUND                                                             
 PYTHON_EXECUTABLE                /usr/bin/python2.7                                                                                 
 PYTHON_INCLUDE_DIR               /usr/include/python2.7                                                                             
 PYTHON_INCLUDE_DIR2              /usr/include/x86_64-linux-gnu/python2.7     
 PYTHON_LIBRARY                   /usr/lib/x86_64-linux-gnu/libpython2.7.so                                                          
 PYTHON_LIBRARY_DEBUG             PYTHON_LIBRARY_DEBUG-NOTFOUND                                                                      
 Snappy_INCLUDE_DIR               /usr/include                                                                                       
 Snappy_LIBRARIES                 /usr/lib/libsnappy.so                                                                              
 USE_CUDNN                        ON                                                                                                 
 USE_LEVELDB                      ON                                                                                                 
 USE_LMDB                         ON                                                                                                 
 USE_OPENCV                       ON                                                                                                 
 USE_PROJECT_FOLDERS              OFF                                                                                                
 python_version                   2

I hope someone is able to give me some advice, thank you very much.
i have same question with you , this is the solution:
modify caffe_root/cmake/Dependencies.cmake add contrib:

---[ OpenCV

if(USE_OPENCV)
find_package(OpenCV QUIET COMPONENTS core highgui imgproc imgcodecs contrib)

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@austingg @qinannan @salvador-blanco @LVguomin